Final Report: GSoC 2019
This is the final report for project Extending ModelPolisher to a universal model annotation tool under Google Summer of Code 2019, organization: NRNB . ModelPolisher is a model annotation tool originally developed for the BiGG Models Knowledgebase. Annotations enhance the reusability and interoperability of biological models. During this project, I extended the model annotation capabilities of ModelPolisher, updated the MatlabParser (reading models in the COBRA matlab format), containerized ModelPolisher using Docker, added functionality to use AnnotateDB for model annotation, and added a feature to produce a model annotation glossary and CombineArchives as outputs. As part of this work, the SQLite version of the ModelPolisher database backend could be removed. Link to G ithub Project: https://github.com/draeger-lab/ModelPolisher The project proceeded according to the goals and timeline of the project proposal , except for one major change: I completed my goal of contain